PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g056650.1.1
Common NameLOC101263275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 442aa    MW: 48737.1 Da    PI: 7.0359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g056650.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12378423655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  Solyc11g056650.1.1 378 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 423
                         689*********************7....688***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15375433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-11376427No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14377433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12378428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-9378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDHSRVEQQP ITSGLTRYRS APSSYFSTLL TTTTPVTGGG CGYARDDFSN LPNSTASSSS  60
TDIEQVFARF VASIGNSNSN SGNFPTNQPI HENPTSNMNV RSDFVVPKQE ITPRLVRHRS  120
SDHSLVSNYQ NQNQHFISPV KREPETLLQS TDHVSASQLN YQSQPQQIEK LNAVTDKPFV  180
FANSASLTPG SSSGGGGNSN LTRYNSSPAG FFAQINIENE YGAIRGIGRY ETGTNAAADT  240
SLSTPKSFKT QVGFSSGKPP ASPRLMAPIS EFGTKVLEEK SMGNEHKNDE HCITDFPMPS  300
WEDSHILSDD FLKTEDIEIE PFSNEDASHN QSSEGLARPP IPLSHHLSLP TSTMEKLLQD  360
SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP NMDKQTNTAD MLDFAVDYIK  420
ELEKQVKILA ERRAKCTCIN K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.169700.0flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127927e-22Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250857.10.0PREDICTED: transcription factor bHLH81
TrEMBLK4D8X60.0K4D8X6_SOLLC; Uncharacterized protein
STRINGSolyc11g056650.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-47bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]